Abstract

Transcription factors (TFs) are essential proteins regulating gene expression by binding to specific nucleotide sequences upstream of genes. Among TF families, the forkhead box (FOX) proteins, characterized by a conserved DNA-binding domain, play vital roles in various cellular processes, including cancer. The FOXA subfamily, encompassing FOXA1, FOXA2, and FOXA3, stands out for its pivotal role in mammalian development. FOXA1, initially identified in the liver, exhibits diverse expression across multiple organ tissues and plays a critical role in cell proliferation, differentiation, and tumor development. Its structural composition includes transactivation domains and a DNA-binding domain, facilitating its function as a pioneer factor, which is crucial for chromatin interaction and the recruitment of other transcriptional regulators. The involvement of FOXA1 in sex hormone-related tumors underscores its significance in cancer biology. This review provides an overview of multifaceted roles of FOXA1 in normal development and its implications in the pathogenesis of hormone-related cancers, particularly breast cancer and prostate cancer.

1. Introduction

A transcription factor (TF) refers to a protein capable of specifically binding to the upstream specific nucleotide sequences of genes and regulating their transcription [1, 2, 3]. It can recognize the promoter of eukaryotes and form a transcription initiation complex with RNA polymerase II, thereby binding together in the promoter region of a gene to initiate and regulate gene expression [1, 2, 3]. The forkhead box (FOX) TF family, also known as FOX proteins, belongs to a subgroup of ‘helix-turn-helix’ proteins [1, 2, 3, 4, 5, 6, 7]. It has a conserved DNA-binding domain protein consisting of approximately 100 amino acids [8, 9]. This domain’s structure is similar to a winged helix domain or a forkhead domain, making it evolutionarily conserved, hence named FOX proteins [10].

The FOX family has 19 subfamilies (FOXA to FOXS), with subfamilies such as FOXP, FOXM, FOXC and FOXA receiving significant attention and research [11, 12, 13]. Several key members of these subfamilies are closely associated with cancer and are involved in the occurrence, maintenance, and progression of malignant tumors [14]. Among the FOX family of proteins, the transcriptional regulatory factor FOXA family (including FOXA1, also named as hepatocyte nuclear factor 3A [HNF3A]; FOXA2, also named as HNF3B; and FOXA3, also known as HNF3G) is currently the most well-studied, playing a crucial role in the development of mammals [15, 16, 17, 18, 19].

FOXA1 was initially isolated from the liver [20, 21, 22, 23, 24]. Foxa1 gene is located on chromosome 14q21.1, with a size of 6508 base pairs (bp) and an mRNA length of 3509 bp. The protein-coding sequence is in the region from 278 to 1696 bp in the mRNA, with a size of 1419 nucleotides. FOXA1 is a protein-coding gene, and its encoded protein consists of 472 amino acids, with a molecular weight of 49,148 Da [25, 26, 27]. The functional structure of FOXA1 includes the N-terminal transactivation domain, centrally shared DNA-binding domain common to the family, and C-terminal transactivation domain associated with histone H3/H4 [14]. The FOXA1 TF is expressed in various organ tissues such as the pancreas, breast, prostate, liver, lungs, brain, gastrointestinal tract, and kidneys [7]. FOXA1 plays a crucial regulatory role in cell proliferation, migration, normal cell growth, differentiation, organ and embryonic development, and tumors [20].

In addition to its role as a classic TF, FOX proteins function as a pioneer factor, closely interacting with chromatin, promoting the binding of other transcription regulatory factors [7, 14, 28, 29, 30, 31]. The following overview will discuss the various aspects of FOXA1’s role in normal development and its functions in sex hormone-related tumors.

2. FOXA1 in Development and Differentiation

Members of FOX TF FOXA subfamily, including FOXA1, FOXA2, and FOXA3, play crucial roles in various stages of mammalian life, starting from embryonic development, continuing through organogenesis, then extending into adulthood, contributing significantly to metabolic and internal environmental stability [31]. Foxa2 mRNA is first gene expressed in mouse embryonic development. Its expression is observed in anterior primitive streak and node during foregut formation, followed by expression in gut, floor plate and notochord [32]. Foxa1 can be detected in late primitive streak of mouse embryo, subsequently in floor plate, notochord, and gut [32]. Foxa3 is last activated gene, expressing in hindgut differentiation [33]. Expression of Foxa1 and Foxa2 is observed in tissues derived from the endoderm, mesoderm, and ectoderm of adult mice [34]. While Foxa1 and Foxa2 are mainly restricted to tissues of endodermal origin, such as the lungs, liver, stomach, and small intestine, Foxa3 is more widely expressed, not only in endoderm-derived tissues, such as the liver and gastrointestinal tract but also in the ovaries, testes, heart, and adipose tissue, with the exception of the lungs [35]. Numerous studies have been conducted over decades to explore their respective roles.

2.1 Impact of FOXA1 on Pancreatic Development and Function

Researchers targeted the Foxa1 gene in mice using a vector knockout approach to examine FOXA1 in tissue development [36]. Subsequent findings revealed that the descendants of mice with Foxa1 gene deletion were born in Mendelian proportions, with homozygous mutants having the same birth weight as their wild-type littermates. However, between 8 and 10 days after birth, there was a rapid decrease in the body weight of Foxa1 mutant mice, ultimately leading to severe hypoglycemia. Further research indicated that animals lacking the Foxa1 gene experienced impaired pancreatic development, resulting in sustained hypoglycemia, lower plasma insulin levels, and elevated glucagon levels. Despite the presence of hypoglycemia, plasma glucagon levels were significantly reduced, associated with pancreatic glucagon precursor gene down-regulation. This suggests that FOXA1 can regulate transcription of the pancreatic glucagon precursor gene and activate its initiation [36]. In 1999, a study using homologous recombination in embryonic stem cells generated mice lacking Foxa1. Homozygous mutant mice exhibited a complex phenotype characterized by abnormal feeding behavior, progressive starvation, persistent hypoglycemia, and emaciation, with a higher mortality rate between days 2 and 14 after birth. These mice display physiological counterregulatory responses to corticosteroid and growth hormone production, inhibiting insulin secretion but failing to stimulate glucagon secretion. These results indicate that FOXA1 plays a crucial role in regulating glucose homeostasis and pancreatic function [36]. In a study conducted in 2004 on isolated pancreatic islet beta cells, the lack of FOXA2 was found to result in excessive insulin release in response to amino acid stimulation but a complete loss of insulin secretion in response to glucose stimulation. This suggests that FOXA2 controls insulin secretion through the activation of multiple pathways [37]. A study in 2010 found that individually knocking out the Foxa1 gene in pancreatic beta cells had no effect on normal pancreatic function. However, a double knockout of both Foxa1 and Foxa2 in mice with a mixed 129SvEv/C57BL/6 background led to the impairment of glucose homeostasis and insulin secretion. In addition, cells with a double knockout of Foxa1 and Foxa2 showed more pronounced defects in glucose-stimulated insulin secretion of the isolated mice islet compared to cells lacking only Foxa2 [38]. These data suggest that actions of systemic FOXA1 loss on pancreatic phenotype is not only achieved by affecting the development of pancreatic beta cells but is also compensated for by the specific effects of FOXA2 on pancreatic beta cells. The compensatory effect for FOXA2 and FOXA1 is not limited to pancreatic islet beta cells but also exists in organs such as the liver and lungs. Knocking out Foxa1 or introducing a Foxa2 mutation specifically in developing respiratory cells had almost no impact on overall lung structure in Foxa2Delta/Delta and Foxa1-/- (null) mice. However, simultaneous loss of Foxa2 and Foxa1 inhibited respiratory cells proliferation and impaired epithelial cell differentiation and branching in Foxa2Delta/Delta and Foxa1-/- mice [39]. A substantial body of literature suggests that FOXA2 and FOXA1 exhibit overlapping and mutually compensatory actions for differentiation and development of pancreas, lungs, liver, and nervous system.

2.2 Impact of FOXA1 on Breast Development

Although the regulatory functions of FOXA1 and FOXA2 seem compensatory in various systems, in tissues primarily dependent on hormone signaling such as prostate and breast, research indicates that FOXA1 itself is a key regulatory factor for tissue-specific differentiation and functional regulation [40, 41, 42]. Breast cancer in women is affected by their reproductive history. Hormonal environment also affects the progression of the disease. Therefore, experiments using mouse mammary glands as a model have been conducted to study breast cancer development mechanisms.

Mouse mammary gland development can be divided into two main stages: pre-pubertal hormone-independent mammary development and hormone-dependent mammary development post-puberty. Studies have found that the post-pubertal hormone-dependent development of the mouse mammary gland is mediated by ERα [43]. Other research has revealed that the absence of FOXA1 results in defects in hormone-induced invasion of mammary ducts related to the loss of ERα expression in the mammary rudiments of Foxa1-/- mice. Further in vitro experiments showed that FOXA1 can regulate the expression of ERα in MCF7 and T47d cells [44]. Thus, FOXA1 may be essential for the expression of ERα in breast [44].

Most mammary development occurs during adolescence after birth. Therefore, researchers have investigated Foxa1’s impact on postnatal mammary morphogenesis in Foxa1-/- mice. These mice, experiencing postnatal lethality due to severe hypoglycemia and dehydration, prompted the implementation of two rescue strategies for studying postnatal mammary development: kidney capsule transplantation and mammary gland orthotopic transplantation [44]. The study revealed that even when exposed to hormones equivalent to pregnancy, mammary collagen could not develop in Foxa1-/- mice. However, these data imply that FOXA1 in mammary epithelium is crucial for ductal growth during adolescence. In contrast to Foxa1-/- mice, Foxa1+/- mice were experimentally viable without transplantation need. Analysis of mammary development during mid-puberty (5 weeks) and late puberty (7 weeks) showed reduced ductal invasion. Ovariectomy and estrogen plus progesterone (E+P) replacement failed to rescue it, suggesting that it is not a result of ovarian steroid hormone deficiency. Foxa1+/- mice also exhibited lactation capability, indicating that a single allele loss delays while not prevents mammary development. These results suggest that FOXA1 may be crucial for ducts invasion and expansion owing to its modulation of ductal cell survival.

2.3 Impact of FOXA1 on Prostate Development

An experiment conducted in the mouse prostate revealed that FOXA1 is detected during development and adulthood of urogenital sinus epithelium, while sonic hedgehog (Shh) and FOXA2 are limited to basal cells of budding prostate. FOXA2 level decreased to nearly undetectable levels shortly after mouse birth. In the absence of FOXA1 in epithelial cells, Nkx3.1 (prostate-specific homeobox protein) is downregulated, and several markers regulated by androgens, specific to the prostate, and novel Foxa1 targets are missing. These data imply a crucial role for FOXA1 in controlling prostate morphology and differentiation [45]. The phenotype of Foxa1-/- mice in prostate development appears immature, with defects in secretory luminal cells and ductal development, while expression or distribution of the androgen receptor (AR) remains unaffected. FOXA1 expression in prostate epithelium correlates positively with AR expression. AR expression and activity are essential for prostate function, survival and development. FOXA1 is capable of opening surrounding chromatin and subsequently allowing the AR to come in close proximity to their target sites and thus exert transcriptional control of gene expression [46]. These results suggest an interaction between FOXA1 and AR in prostate-derived cells to promote AR target genes expression, initiating prostate development. These results highlight a clear connection between interaction of steroid hormone receptors and FOXA1 and development of hormone-sensitive tissues. FOXA1 is a key regulatory factor in hormone-sensitive tissues development and may play a potential role in hormone-dependent cancers.

2.4 Impact of FOXA1 on Liver Development

FOXA1 was first purified from the liver [47]. FOXA1 is a specific regulatory factor in liver development. However, studies using HNF3α-/- mice obtained through gene targeting showed that these mice died shortly after birth owing to dehydration and hypoglycemia. The research revealed impaired pancreatic development in these animals, but the liver appeared morphologically normal [36]. This indicates that FOXA1 is not the sole regulatory factor in liver development. Similar to the compensation by Foxa2 maintaining normal pancreatic morphology after Foxa1 gene knockout, Foxa2 can also compensate for Foxa1 loss in liver.

The liver develops from the foregut endoderm, which forms a hepatic bud invading the septum transversum, giving rise to the liver and intrahepatic bile duct tree. Experiments in mice lacking both Foxa1 and Foxa2 genes showed no apparent hepatic bud in the embryos and loss of expression of alpha-fetoprotein, a liver cell marker. Thus, Foxa1 and Foxa2 play a crucial role in foregut endoderm development and initiating liver development in mice [48]. A study in 2010 used conditional gene ablation in the late stages of liver development in the mice, showing that simultaneous loss of Foxa2 and Foxa1 caused bile duct fibrosis and proliferation [49]. Further research revealed that abnormal bile duct formation due to the simultaneous loss of Foxa1 and Foxa2 is at least partially attributed to the induction of interleukin 6 (IL-6) expression. IL-6 expression serves as a proliferative signal for bile duct cells in mice [49]. Glucocorticoid receptor is a negative IL-6 regulator. In the absence of both FOXA1 and FOXA2, glucocorticoid receptor cannot bind to IL-6 promoter, leading to enhanced IL-6 expression in liver. Therefore, after liver-specific differentiation, normal bile duct development requires FOXA1 and FOXA2 to prevent excessive proliferation of bile duct cells. FOXA1 and FOXA2 act as terminators of bile duct expansion in adult liver [49].

2.5 Impact of FOXA1 on Lung Development

A study observed FOXA1 expression in lung buds at 10.5 days in mouse embryos [34]. In adult mouse nasal passages, FOXA1 had strong expression in respiratory epithelium, while FOXA2 had weaker expression in mucous gland epithelium, and no expression of FOXA1 and FOXA2 was detected in olfactory gland epithelium of the mice. In adult mouse trachea and bronchi, FOXA1 and FOXA2 were detected in Clara cells, epithelial cells, cilia, and basal cells. In peripheral lung, co-expression of FOXA2 and FOXA1 was detected in type II alveolar cells and epithelial cells of the mice [34]. While Foxa2 was selectively knocked out from mouse respiratory epithelial cells during lung bud stages, strict dependence on Foxa2 was found during lung alveolarization in transgenic mice, indicating its key role in alveolar formation process and regulating epithelial cell differentiation after birth [50]. Foxa1-/- mice showed delayed expansion in the peripheral lung on day 10.5 of embryonic development, but no interference during late embryonic development (17.5–18.5 days). Foxa1-/- mice exhibited significantly delayed alveolarization on postnatal day 5, while lung histology was comparable to the wild-type control on postnatal day 13, suggesting a stage-specific regulatory role for Foxa1 in epithelial cell differentiation [51]. Foxa1 stimulated the activity of Clara cell secretory protein (CCSP) promoter region I, while Foxa2 inhibited the activity of CCSP promoter region I in cultured lung cells. Both factors play opposing roles in regulating the function of Clara cells in the lung [52]. Foxa2 and Foxa1 modulate Shh and Shh-dependent genes in respiratory epithelium, affecting lung mesenchymal genes expression necessary for branching morphogenesis in mice [53]. Loss of both Foxa2 and Foxa1 did not affect normal branching morphology in the fetal lungs of mice, but simultaneous loss inhibited epithelial cell proliferation, differentiation, and branching. This suggests that Foxa2 can compensate for Foxa1 loss in lung development, similar to tissues such as the pancreas and liver [39]. Surfactant protein B (SPB) gene transcription is limited to terminal bronchioles and alveolar epithelium [54]. HNF3 common DNA-binding sequences in the SPB promoter region have been identified, and further studies showed that FOXA1 activates SPB in a cell type-specific manner [55]. Overall, these studies imply that FOXA1 is involved in various pathways in lung development, growth, and maturation.

2.6 Effects of FOXA1 on Brain Development

Immunohistochemical analysis using mice revealed that in the early embryonic stages, FOXA2 is expressed in notochord, node and floor plate, while FOXA1 is expressed only in notochord and floor plate. In adult mice, FOXA2 and FOXA1 have overlapping expression in the ventral midbrain, with distinct spatial distributions. Both are significantly expressed in the cerebellum (Purkinje cells) and olfactory bulb of mice [34]. Mutation in the Foxa2 gene in mice (Foxa2-/-) results in the loss of nodal and notochord formation, leading to secondary defects in neural tube dorsal-ventral patterning and embryonic lethality [56]. The interaction between Goosecoid and the Foxa2 gene has been found to co-regulate neural tube formation in mouse embryos [57]. Although mice lacking Foxa1 do not show apparent defects in central nervous system structure [36, 58], the absence of Foxa1 delays the maturation of dopamine neurons in the midbrain [59]. Further studies have revealed that FOXA2 and FOXA1 control differentiation of dopamine progenitor cells in the midbrain by positively regulating the expression of Neurog2. FOXA2 and FOXA1 are involved in regulating expression of nuclear receptor 4A2 and engrailed 1 in the early and late stages of dopamine neuron differentiation in mouse midbrain. FOXA2 and FOXA1 play crucial roles in multiple stages of midbrain dopamine neuron development of mice [59]. A study in mutant mice demonstrated that FOXA2 and FOXA1 positively regulated the expression of LIM homeobox transcription factor 1α (Lmx1a) and Lmx1b, inhibited the expression of NK2 homeobox 2 (Nkx2.2) in midbrain dopamine progenitor cells [60]. FOXA2 and FOXA1 then cooperatively interacted with Lmx1b and Lmx1a to regulate midbrain dopamine neuron differentiation of the mice. Chromatin immunoprecipitation data suggested that Nkx2.2 and tyrosine hydroxylase genes might be the direct targets of FOXA2 and FOXA1 in vivo in mouse midbrain dopamine cells. FOXA2 and FOXA1 also inhibited the differentiation of GABAergic neurons by suppressing Helt gene in mouse ventral midbrain. These studies collectively indicate that FOXA2 and FOXA12 are essential regulators in midbrain dopamine neuron development [60]. FOXA1 and FOXA2 specify the ventral midbrain precursor identity by both positively and negatively regulating the Shh signal in the mice [61].

2.7 Effect of FOXA1 on Gastrointestinal Development

Immunohistochemical analysis in mice revealed that from embryonic origin to adulthood, FOXA2 and FOXA1 are co-expressed in gastrointestinal epithelium [34]. FOXA2/FOXA1 can activate promoters of mucin 2 (Muc2) expressed in goblet cells and preproglucagon expressed in enteroendocrine cells. Functional experiments using the Cre-loxP system in mice with simultaneous loss of Foxa2 and Foxa1 in intestine showed a lack of cells expressing pancreatic polypeptide and a reduction in peptide YY (L cells) and somatostatin (D cells) [62]. The mRNA levels of preproglucagon, somatostatin, and peptide YY in Foxa1/Foxa2 mutant mice were decreased in small intestines. TFs islet-1 and paired box 6 levels in small intestine were also reduced, suggesting that FOXA2 and FOXA1 affect TF network in enteroendocrine lineage. Loss of FOXA1 and FOXA2 also resulted in a reduced number of goblet cells and altered expression of secretory Muc (Muc2, Muc5b, Muc5ac, and Muc6). These results indicate that FOXA2 and FOXA1 are key players of the endocrine lineage in gastrointestinal tract, playing a crucial role in controlling the differentiation of secretory cells of the mice. A study further demonstrated that FOXA2 and FOXA1 control Muc2 expression in intestinal epithelial cells of mice [63]. The critical roles of FOXA1 protein in goblet cells generation and development and function of enteroendocrine cells are crucial for maintaining normal intestinal absorption, and their loss may lead to nutritional deficiencies, potentially contributing to growth retardation in Foxa1/Foxa2-deficient mice during early development [63].

3. Function of FOXA1 in Malignant Tumors

FOXA1 is overexpressed in breast, prostate, lung, thyroid, and esophageal cancers [64, 65, 66, 67, 68]. However, FOXA1 is underexpressed in advanced-stage bladder cancer, leading to the increased proliferation of tumor cells [69]. Therefore, the function of the FOXA1 TF is complex, exhibiting both oncogenic and tumor-suppressive effects. The following sections will provide a review of FOXA1’s roles in breast and prostate cancers.

3.1 FOXA1 in Breast Cancer

In breast cancer, estrogen receptors (ERs) and androgen receptors (ARs) jointly modulate cell differentiation and proliferation. They are often co-expressed, but AR also expressed in ER-negative breast cancer. Research suggests that AR activation in ER-negative breast cancer cells is acted through ERs as an intermediate pathway to regulate gene transcription [70]. In ER-negative breast cancer cells, androgens potentiate proliferation, whereas in ER-positive breast cancer cells, androgens hinder proliferation [71, 72]. ER is a key characteristic in most breast cancers, and binding of ER to genome is associated with FOXA1 expression. FOXA1 is an essential modulator of ER-DNA binding and its target genes transcription [73].

FOXA1 is highly expressed in ER-positive breast cancer, with an expression rate of up to 97%. Additionally, FOXA1 promotes AR DNA binding in ER-positive/-negative breast cancer cells. Ratios of FOXA1, ER, and AR may affect the proliferation and invasion of cancer cells. Despite this, FOXA1 is considered the best predictor of breast cancer recurrence [74].

A study in 2007, involving immunohistochemical analysis of tumor tissues from 404 breast cancers, found that 300 exhibited FOXA1 expression with a score >3. FOXA1 was correlated with ER expression, progesterone receptor expression, and luminal A subtype. As the tumor grade worsened, FOXA1 expression scores significantly decreased. In the luminal A subtype, FOXA1 was correlated with cancer-specific survival. FOXA1 was associated with luminal A-type breast cancer and was a key predictor of cancer-specific survival in ER-positive tumor patients, suggesting a potential role for FOXA1 in treating breast cancer [75]. Another study in 2008 also considered FOXA1 as a crucial marker of luminal-type breast cancer, providing possibilities for luminal-type breast cancer management [76].

Hormone therapy is a crucial method for treating ER-positive breast cancer patients. ER, a TF of nuclear receptor family with two isoforms, ERα and ERβ, is targeted by aromatase inhibitors to prevent systemic and intratumoral estrogen biosynthesis, or selective ERα antagonists such as tamoxifen [77]. Tamoxifen competes for binding with ERα, induces conformational changes in ERα, and inhibits the expression of genes at sites stimulated by estrogen [78]. Moreover, research indicates that the binding of ERs to the genome is associated with FOXA1 expression. FOXA1 involves cellular response to tamoxifen. Additional studies using tamoxifen-resistant MCF7 cells have shown that Foxa1 silence inhibits ligand-independent ERα binding to chromatin and suppresses cell proliferation without modulating ERα levels. These results indicate that FOXA1 is an essential determinant of anti-estrogen response in ERα-positive cells. FOXA1 correlated ERα-positive breast cancer prognosis, even in cells resistant to tamoxifen [73].

Multiple studies have demonstrated the statistically significant correlation between FOXA1 and ERs. However, the high expression of FOXA1 is still found in some ER-negative breast cancers [79]. Using microarray data, researchers categorized breast tumor cells via steroid receptor activity into three types: basal (ER- AR-), luminal (ER+ AR+) and molecular apocrine (ER- AR+). Estrogen signaling is most active in luminal type, whereas androgen signaling is most active in molecular apocrine type. Molecular apocrine type exhibits high AR activity and expression, with another characteristic being the expression of FOXA1 [80].

Clinically, apocrine cancer, a rare type of breast cancer, is characterized by ER negativity and AR positivity (ER- AR+), accounting for approximately 1–4% of all breast cancer cases [81]. For ER-negative breast cancer, chemotherapy is the primary treatment method, with fewer alternative treatment options. Therefore, targeting AR has become a promising therapeutic strategy for this subtype of breast cancer. Apocrine cancer features ER negativity and AR positivity, but lacks profile similar to ER+ luminal type. In a study conducted in 2011, Robinson et al. [70] used the ER-AR+ molecular apocrine cell model of tumors (referred to as MDA-MB-453 cells) to analyze how AR binds. The authors ultimately found a binding characteristic similar to ER-binding breast cancer cells. Simultaneously, they discovered that AR binding was mediated by FOXA1, and silencing Foxa1 inhibited AR binding, leading to the proliferation of most cells expressing apocrine cancer gene characteristics. These findings suggest that AR can only act with ER cis-regulatory elements in the presence of FOXA1, initiating transcription similar to ER-modulated transcription in luminal breast cancer. AR occupies 37% of FOXA1-binding sites, confirming that FOXA1 is a crucial intermediary for AR transcription in this cell type. Hirata and colleagues [82] demonstrated that FOXA1 confers resistance to apoptosis induced by transforming growth factor-β (TGF-β) in breast cancer cells by hindering nuclear translocation of Smad3. Dai et al. [83] revealed FOXA1 as a prognostic marker for triple-negative breast cancers, revealing its role in transcriptionally suppressing superoxide dismutase 2 and IL-6 in breast cancer. Fu et al. [84] showed that the upregulation of FOXA1 potentiated transcriptional reprogramming and enhancer in endocrine-resistant breast cancer. FOXA1 mutations have been linked to distinctive chromatin profiles and can affect therapeutic response in breast cancer [85]. Rathod et al. [86] demonstrated that the regulation of FOXA1 makes the treatment effect of the benzamide histone deacetylase inhibitor specific to breast cancer. He et al. [87] revealed that FOXA1 overexpression hindered interferon (IFN) signaling and immune response in cancer. Wu et al. [88] demonstrated that FOXA1 reprogramming dictates the response of retinoid X receptor in ER1-mutant breast cancer. Liu et al. [89] found that FOXA1 O-GlcNAcylation-mediated transcriptional switching governs the metastatic capacity in breast cancer. Ji et al. [90] demonstrated that FOXA1 can bind to and unpack condensed chromatin, regulating breast cancer cell migration and proliferation. Mechanism of actions of FOXA1 in regulating breast cancer is illustrated in Fig. 1.

Fig. 1.

The mechanism of actions of FOXA1 in regulating breast cancer. (A) FOXA1 modulates both estrogen-induced gene transactivation and repression. (B) FOXA1 is important for ER expression, and ER is suggested to regulate FOXA1 expression in an estrogen-dependent manner. ER, estrogen receptor; ERE, estrogen response element; ESR1, estrogen receptor 1; FOXA1, forkhead box A1; RPRM, Reprimo, TP53 dependent G2 arrest mediator homolog.

Studies have also proposed several mechanisms linking diabetes with breast cancer, including activation of the insulin pathway, insulin-like growth factor (IGF) pathway, and modulation of endogenous sex hormones [91]. Chronic hyperglycemia, known as the Warburg effect, may contribute to increased breast cancer risk [92]. Elevated levels of insulin and IGF-1, coupled with inflammatory cytokines, directly impact cancer cell behavior, influencing proliferation, apoptosis, and metastasis [93]. Specifically, IGF-1 binds to IGF-binding protein 3, affecting breast cancer risk, particularly in premenopausal women. Insulin, another mitogen, stimulates the insulin receptor and promotes malignant transformation of breast epithelial cells [94]. Moreover, insulin resistance can lead to hyperinsulinemia, altering androgen synthesis and estrogen production, thereby affecting breast cancer risk, especially in postmenopausal women [95]. On the other hand, Vatamaniuk et al. [96] demonstrated that Foxa1-deficient mice exhibited impaired insulin secretion due to uncoupled oxidative phosphorylation. Zhu et al. [97] showed that FOXA1 suppressed the transcription of special AT-rich sequence binding protein 1 and inactivated the Wnt/β-catenin pathway to alleviate diabetic nephropathy in a mouse model. However, the role of FOXA1 in the relationship between diabetes and breast cancer remains to be determined in future studies.

3.2 FOXA1 in Prostate Cancer
3.2.1 Expression of FOXA1 in Prostate Cancer

FOXA1 plays an essential in prostate development. FOXA1 regulates prostate morphogenesis and cell differentiation by interacting with androgen signaling [44]. An experiment conducted in the prostate of mice revealed that the expression of mouse FOXA1 occurs throughout the development and adulthood of the urogenital sinus epithelium, whereas Shh and FOXA2 expression is restricted to the prostate budding basal cells. In Foxa1-deficient mice, the prostate exhibits a profound altered ductal pattern resembling primitive epithelial cords surrounded by a thick stroma layer. The characteristics of these mutated cells suggest the presence of a group of basal-like cells comparable to embryonic urogenital sinus epithelium, with a lack of mature or differentiated ductal epithelial cells in Foxa1-deficient epithelium. In epithelial cells lacking Foxa1, the prostate-specific homeobox protein Nkx3.1 is downregulated, and several androgen-regulated markers and novel Foxa1 target genes specific to prostate cancer are absent. These results imply that FOXA1 exerts key functions in regulating cell differentiation and prostate morphogenesis, exhibiting a tumor-suppressive role in the prostate epithelium [98].

Regarding how FOXA1 regulates the occurrence, development, and/or metastasis of tumors in the prostate, there is currently much research on this topic. Studies have speculated that FOXA1 interacts with ARs in prostate-derived cells to enhance AR target genes expression. The interaction between these TFs may initiate prostate development [98]. Most prostate cancers are driven by abnormal AR signaling, and there is currently a limited understanding of underlying mechanism. Research has shown the differential expression of FOXA2 and FOXA1 proteins in epithelial cells during mouse prostate development. A study using immunoblot analysis in LPB-Tag LADY mouse prostate cancer model, human prostate cancer specimens, and various prostate cancer cell lines examined the expression of FOXA proteins. Results showed high FOXA1 expression in the regions of prostatic intraepithelial neoplasia in both androgen-dependent 12T-7f and metastatic androgen-independent 12T-10 LADY models. Significant expression of FOXA2 and FOXA1 was observed in invasive undifferentiated neuroendocrine carcinoma, hormone-independent and metastatic tumors originating from 12T-10, NE-10 xenograft tumors, and all metastatic lesions isolated from 12T-10 mice. FOXA1 protein can be observed in human prostate, and its expression level is indistinguishable from benign tissue. FOXA2 can only be detected in neuroendocrine small cell carcinomas and certain high Gleason grade adenocarcinomas, while it is undetectable in low-grade prostate adenocarcinomas. In vitro functional assays suggest that FOXA2 can activate ARs and androgen-dependent prostate-specific genes in a ligand-independent manner. These results indicate importance of FOXA proteins in prostate cancer, and the possible involvement of FOXA2 in prostate cancer progression toward androgen independence [99].

The level of AR in primary prostate cancer predicts a poorer prognosis, with higher mortality rates. FOXA1 not only activates the AR pathway but depletion of FOXA1 also causes a significant redistribution of AR binding on chromatin in LNCaP-1F5 cells, corresponding to changes in the expression characteristics of androgen-dependent genes. Research has shown the overlap between AR and FOXA-binding sites, which account for approximately 70% of AR-binding sites, whereas AR-binding sites account for about 25% of FOXA1 binding sites. This suggests FOXA1-mediated transcriptional regulation in prostate cancer cells. Establishing a model with silenced Foxa1 revealed an increase in the number of sites occupied by other ARs, doubling the number of binding events. Therefore, these findings suggest that FOXA1 has a dual function in both promoting and inhibiting AR. Based on AR-binding sites, prostate cancer can be classified into three types: independent of FOXA1, dependent on FOXA1 as a pioneer factor, and masked by FOXA1 and activated when FOXA1 is depleted. High expression of FOXA1 is associated with a poor prognosis, while low FOXA1 expression, even with high AR expression levels, indicates a favorable prognosis of patients with prostate cancer. The prognosis of prostate cancer is worse when both FOXA1 and AR proteins are expressed simultaneously compared to when AR is expressed alone [100].

Late-stage prostate cancer can progress to systemic metastatic tumors, which are often insensitive to androgens and ultimately lead to death. Whole-genome sequencing in metastatic prostate tumors has identified amplifications in the gene locus 14q21, which includes the Foxa1 gene [65]. Understanding the basic mechanisms by which FOXA1 regulates AR binding is crucial for determining the FOXA1’s impact on androgen-dependent transcriptional modulation, providing effective diagnosis and treatment for prostate cancer patients. Research has shown that FOXA1 is recruited to chromatin modifications associated with active chromatin, thereby promoting nuclear receptors recruitment and activation of transcription [41].

3.2.2 FOXA1 and the AR

Most prostate cancers are androgen-dependent, meaning that they respond to androgen deprivation therapy. The selected treatment methods are prostatectomy or radiation therapy. However, despite androgen deprivation, these tumors eventually develop into androgen-independent forms, posing a challenge for treatment when they recur or have already metastasized at the time of diagnosis [101]. Previous studies have indicated FOXA1 expression in epithelial cells of prostate gland, where it regulates prostate-specific genes transcription. Another study reported FOXA1 as a novel inhibitory factor for AR in prostate cells. FOXA1 inhibits the targeted transcriptional activation of androgen response elements by AR in a dose-dependent manner. FOXA1 physically interacts with the AR to inhibit its transcriptional activation. Moreover, overexpression of FOXA1 reduces of prostate-specific antigen expression, induced by androgens, in LNCaP cells. These findings illustrate that FOXA1 is key for androgen-activated expression and serves as a novel inhibitor of AR [102].

Studies have suggested that FOXA1 plays a crucial role in the neuroendocrine differentiation of prostate cancer. Downregulation of FOXA1 in prostate cancer cells results in an upregulation of IL-8 expression. IL-8 can activate MAPK/ERK pathway, leading to phosphorylation of ERK1/2 and subsequently upregulating 17β-hydroxysteroid dehydrogenase 2, a marker of neuroendocrine differentiation in prostate cancer cells. Loss of the Foxa1 gene may exert a significant role in prostate cancer development into neuroendocrine prostate cancer. IL-8 and the MAPK/ERK pathway may be potential targets for prostate cancer treatment [103]. FOXA1 also binds to the TF homeobox B13 (HOXB13) and may regulate its activity, where HOXB13 acts as a unique androgen-independent gene expressed in the epithelial cells of the adult mouse prostate [104]. These results suggest that FOXA1 can regulate transcriptional activity of AR target genes, and during prostate cancer occurrence and development, FOXA1 can function through both AR-dependent and AR-independent pathways. The interactions between AR and FOXA1 in prostate cancer are illustrated in Fig. 2.

Fig. 2.

The interactions between FOXA1 and AR in prostate cancer. (A) FOXA1 modulates both androgen-induced gene transactivation and repression. (B) FOXA1 mutants can enhance EMT to promote prostate cancer metastasis. FOXA1 can modulate AR cistrome along with HOXB13. FOXA1 mutations can result in enhanced AR binding leading to altered AR transcriptional programs. AR, androgen receptor; ARE, androgen response element; FOXA1, forkhead box A1; EMT, epithelial-mesenchymal transition; HOXB13, Homeo Box B13.

3.2.3 Other Roles of FOXA1 in Prostate Cancer

FOXA1 in the prostate not only participates in the regulation of AR transcriptional activity but is also involved in other signaling pathways during prostate development and progression. FOXA1/2 positively regulates the developmental gene anterior gradient 2 (AGR2). Overexpression of AGR2 promotes the migration and invasive behavior of non-metastatic human prostate cancer cells (LNCaP), while silencing of AGR2 inhibits tumor cell invasion. ErbB3 binding protein 1 (EBP1) may act as an inhibitor of AGR2 and is underexpressed in prostate cancer. Studies have shown that the anti-invasive effect of EBP1 is due, at least in part, to the inhibition of AGR2 expression. Functional experiments have demonstrated that EBP1 can downregulate the transcription of AGR2 stimulated by FOXA1 and FOXA2, reducing prostate tumor metastasis behavior. Conversely, knockout of EBP1 increases activity of the AGR2 promoter stimulated by FOXA1 and FOXA2, leading to increased prostate tumor metastasis. There is a negative correlation between EBP1 and AGR2 levels in primary prostate tumors and prostate cancer cell lines. These results demonstrate that FOXA1 plays a regulatory role in metastatic prostate cancer through the EBP1-FOXA-AGR2 signaling pathway [105]. Another study showed that EBP1 can inhibit AR-mediated gene transcription, thus participating in the tumorigenesis of prostate cancer [105]. Based on these results, it can be inferred that EBP1 may inhibit AR transcriptional activation by suppressing the transcriptional function of AGR2 stimulated by FOXA1. Song et al. [106] demonstrated that inhibiting FOXA1-mediated repression of TGF-β signaling effectively hinders the progression of castration-resistant prostate cancer. Adams et al. [107] observed that FOXA1 mutations results in altered pioneering activity, differentiation, and phenotypes in prostate cancer. Gui et al. [108] revealed that selectively targeting poly (ADP-ribose) polymerase 2 disrupts AR signaling, inhibiting prostate cancer growth by impairing FOXA1 function. Park et al. [109] reported EZH2-catalyzed methylation as a pivotal mechanism for FOXA1 protein stability, offering potential for therapeutic enhancement in prostate cancer through enzymatic EZH2 inhibitors. He et al. [87] demonstrated that FOXA1 overexpression suppresses IFN signaling and the immune response in prostate cancer. Su et al. [110] demonstrated that FOXA1 promotes angiogenesis in prostate cancer by inducing the expression of multiple pro-angiogenic factors. Hwang et al. [111] showed that cyclic AMP-responsive element-binding protein 5 reprograms FOXA1 nuclear interactions to confer resistance to AR-targeting therapies in prostate cancer. Del Giudice et al. [112] highlighted the role of FOXA1 in rewiring the alternative splicing landscape in prostate cancer, involving chromatin access, regulation of splicing factors, and alternative splicing of exons influencing patient survival. Celada et al. [113] discovered that lysosome-dependent FOXA1 ubiquitination contributes to the luminal lineage of advanced prostate cancer. Therefore, FOXA1 plays a significant role in the occurrence and progression of prostate cancer, directly influencing the development of prostate cancer through the regulation of AR, and can also exert its effects through other pathways that do not affect AR expression levels. Collectively, the expression level of FOXA1 is associated with the malignancy and metastasis of prostate cancer. These studies provide important evidence that FOXA1 may serve as a prognostic factor in prostate cancer and a potential target for its treatment.

4. Conclusions

FOXA1 plays a crucial regulatory role in the proliferation and differentiation of normal cells, organ and embryo development, and tumors. It is expressed and functional in various organ tissues including the pancreas, breast, prostate, liver, lungs, brain, gastrointestinal tract, and kidneys [20]. Numerous studies have indicated overlapping and compensatory roles of FOXA1 and FOXA2 in the development and differentiation of the pancreas, lungs, liver, and nervous system. The tissue-specific regulation of the Shh pattern by FOXA1 is evident, as the loss of FOXA1 reduces Shh in the lungs and brain but increases Shh in the prostate [53, 61]. Considering the presence of abnormal Shh signaling in various cancer types, further evaluation of the interaction between FOXA1 and Shh is needed. Additionally, Zrt- and Irt-like protein 9 (ZIP9) has been recognized as a newly identified membrane AR as well as a zinc transporter protein [114]. ZIP9 functions via multiple signal transduction pathways, activating a stimulatory G protein in granulosa cells, an inhibitory one in cancer cells, and a Gq11 pathway in spermatogenic cells, without involvement in AR signaling [114]. The G protein-coupled ER (GPER) is characterized by its seven-transmembrane-domain structure, and its nongenomic activities mediated by GPER are independent of the estrogen nuclear receptor [115]. Upon ligand binding, GPER initiates various downstream pathways that elicit diverse biological effects, regulating cell growth, migration, and programmed cell death across different tissues [116]. Estrogen-induced activation of GPER, along with the GPER-selective agonist G-1, can activate the phosphoinositide 3-kinase/Akt pathway, leading to subsequent inactivation of FOXO3a and thereby promoting cell survival [117]. However, the interaction between FOXA1 and ZIP9/GPER signaling remains largely unexplored, necessitating further investigation.

FOXA1 is overexpressed in breast, prostate, lung, thyroid, and esophageal cancers [64, 65, 66, 67, 68]. By contrast, FOXA1 is underexpressed in advanced late-stage bladder cancer, resulting in increased tumor cell proliferation [69]. Therefore, FOXA1 has a complex function, exhibiting both oncogenic and tumor-suppressive roles. In breast cancer, the expression level of FOXA1 is significantly associated with luminal-type breast cancer and serves as an important prognostic factor for the survival of ER-positive breast cancer, suggesting a potential role for FOXA1 in the treatment of luminal-type breast cancer [75]. FOXA1 also plays a crucial role in the occurrence and development of prostate cancer, directly influencing the development of prostate cancer through regulation of the AR, and can exert its effects through other pathways that do not affect AR expression levels. The expression level of FOXA1 is associated with the malignancy and metastasis of prostate cancer. FOXA1 functions not only in hormone-dependent tumors but also in hormone receptor-negative, non-hormone-dependent tumors. Hormone receptor-negative diseases are more invasive and represent a challenging characteristic of cancer to treat, emphasizing the need for further research in this direction. Considerable advancements have been achieved in understanding the biological significance of FOXA1 in the development, differentiation, and progression of breast and prostate cancers. These intricate findings underscore the necessity for further investigation aimed at exploring the potential therapeutic avenues targeting FOXA1 through tailored treatment strategies. While much of our understanding of FOXA1 in cancer pertains to its involvement in hormone receptor-driven breast and prostate cancers, it is imperative to extend future research efforts beyond the realm of hormone signaling. There is an urgent need to delve into the role of FOXA1 in hormone-independent breast and prostate cancers, as well as cancers affecting other tissues where FOXA1 has been implicated in normal developmental processes.

Author Contributions

ZY, YM, and JZ conceived/designed the study. YW, FD and YZ contributed to review literature. JZ wrote the manuscript. ZY and YM reviewed and edited the manuscript. All authors contributed to editorial changes in the manuscript. All authors read and approved the final manuscript. All authors have participated sufficiently in the work and agreed to be accountable for all aspects of the work.

Ethics Approval and Consent to Participate

Not applicable.

Acknowledgment

Not applicable.

Funding

This work was supported by Hainan Provincial Natural Science Foundation of China (No. 822RC836), Hainan Province Science and Technology Special Fund (No. ZDYF2020121), National Natural Science Foundation of China (81960283), The specific research fund of The Innovation Platform for Academicians of Hainan Province, Hainan Province Clinical Medical Center.

Conflict of Interest

The authors declare no conflict of interest.

References

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