IMR Press / FBL / Volume 29 / Issue 3 / DOI: 10.31083/j.fbl2903107
Open Access Original Research
From Sleep Deprivation to Severe COVID-19: A Comprehensive Analysis of Shared Differentially Expressed Genes and Potential Diagnostic Biomarkers
Jing Peng1,†Xiaocheng Zhu1,†Wuping Zhuang1Hui Luo1,2,*E Wang1,2,*
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1 Department of Anesthesiology, Xiangya Hospital, Central South University, 410008 Changsha, Hunan, China
2 National Clinical Research Center for Geriatric Disorders (Xiangya Hospital), 410008 Changsha, Hunan, China
*Correspondence: huiluo@csu.edu.cn (Hui Luo); ewang324@csu.edu.cn (E Wang)
These authors contributed equally.
Front. Biosci. (Landmark Ed) 2024, 29(3), 107; https://doi.org/10.31083/j.fbl2903107
Submitted: 19 September 2023 | Revised: 8 January 2024 | Accepted: 11 January 2024 | Published: 18 March 2024
Copyright: © 2024 The Author(s). Published by IMR Press.
This is an open access article under the CC BY 4.0 license.
Abstract

Background: This study aims to identify biomarkers through the analysis of genomic data, with the goal of understanding the potential immune mechanisms underpinning the association between sleep deprivation (SD) and the progression of COVID-19. Methods: Datasets derived from the Gene Expression Omnibus (GEO) were employed, in conjunction with a differential gene expression analysis, and several machine learning methodologies, including models of Random Forest, Support Vector Machine, and Least Absolute Shrinkage and Selection Operator (LASSO) regression. The molecular underpinnings of the identified biomarkers were further elucidated through Gene Set Enrichment Analysis (GSEA) and AUCell scoring. Results: In the research, 41 shared differentially expressed genes (DEGs) were identified, these were associated with the severity of COVID-19 and SD. Utilizing LASSO and SVM-RFE, nine optimal feature genes were selected, four of which demonstrated high diagnostic potential for severe COVID-19. The gene CD160, exhibiting the highest diagnostic value, was linked to CD8+ T cell exhaustion and the biological pathway of ribosome biosynthesis. Conclusions: This research suggests that biomarkers CD160, QPCT, SIGLEC17P, and SLC22A4 could serve as potential diagnostic tools for SD-related severe COVID-19. The substantial association of CD160 with both CD8+ T cell exhaustion and ribosomal biogenesis highlights its potential pivotal role in the pathogenesis and progression of COVID-19.

Keywords
sleep deprivation
COVID-19
bioinformatics
machine learning
immune cell infiltration
biomarkers
CD160
Funding
200YFC2005300/National Key Research and Development Program of China
2020JJ4900/Natural Science Foundation of Hunan Province
Figures
Fig. 1.
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